BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB004E12SP1|AL425270
(630 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1423 1098 0.0
>3x_Contig1423
Length = 8454
Score = 1098 bits (539), Expect = 0.0
Identities = 596/631 (94%), Gaps = 1/631 (0%)
Strand = Plus / Plus
Query: 1 gatcgtccacaatcagttacttaactcctctggtctccagattaaccttttattattcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2358 gatcgtccacaatcagttacttaactcctctggtctccagattaaccttttattattcaa 2417
Query: 61 aggtttttttacatgagctttttgtatgactatttttttttttttttttcaaggtctgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2418 aggtttttttacatgagctttttgtatgactatttttttttttttttttcaaggtctgat 2477
Query: 121 gatttagawaatgaagagaaaggaacctgcaag-maatgamawmcaagtcctggcgtgaa 179
|||| ||| |||||||||||||||||||||||| ||||| | ||||||||||||||||
Sbjct: 2478 gattaagataatgaagagaaaggaacctgcaaggcaatgacatccaagtcctggcgtgaa 2537
Query: 180 cmagtttccgttatcaaagaagtgagtwttacatttcaaatwaagaaggaawawacawag 239
| ||||||||||||||||||||||| | ||||||||||||| ||||||||| | ||| ||
Sbjct: 2538 ccagtttccgttatcaaagaagtgatttttacatttcaaattaagaaggaatatacatag 2597
Query: 240 gawagaataaggaaaaagawagtgttawawawawawatgtagaagaawaaaatatatgtg 299
|| |||||||| ||||| | | ||| | | | | ||||||||||| || |||||||||
Sbjct: 2598 gatagaataagtttaaagatatttttatatatatatatgtagaagaataatatatatgtg 2657
Query: 300 gagagaggtcctaattttatattcttttttttacttcawaagaamgamacaattttagaa 359
|||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct: 2658 gagagaggtcctaattttatattcttttttttacttcataagaacgacacaattttagaa 2717
Query: 360 agcatcgtctgagamaaaatcgtgactttttctcttcaacttaaagagaatgaaawagag 419
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2718 agcatcgtctgagacaaaatcgtgactttttctcttcaacttaaagagaatgaaatagag 2777
Query: 420 agatgagatgacgagttaagaagagatttggagaaacaagttttccacaaaaawaaaaaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 2778 agatgagatgacgagttaagaagagatttggagaaacaagttttccacaaaaataaaaaa 2837
Query: 480 aaagaatccatatcagtgtctcttatcgaatcttttgtaattgtagtaactgacgtaggc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2838 aaagaatccatatcagtgtctcttatcgaatcttttgtaattgtagtaactgacgtaggc 2897
Query: 540 gtctgcagcaatgaaggcactcaaccctgaaacaatcaaagcgatatccttgtcagactt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2898 gtctgcagcaatgaaggcactcaaccctgaaacaatcaaagcgatatccttgtcagactt 2957
Query: 600 ccccttcaagaaacgtcttttgttagmatat 630
|||||||||||||||||||||||||| ||||
Sbjct: 2958 ccccttcaagaaacgtcttttgttagcatat 2988
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.41 0.717 1.34
Gapped
Lambda K H
1.41 0.717 1.34
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,236
Number of Sequences: 1807
Number of extensions: 17236
Number of successful extensions: 4095
Number of sequences better than 1.0e-20: 1
length of query: 630
length of database: 10,358,551
effective HSP length: 16
effective length of query: 614
effective length of database: 10,329,639
effective search space: 6342398346
effective search space used: 6342398346
T: 0
A: 40
X1: 5 (10.2 bits)
X2: 14 (28.5 bits)
S1: 12 (24.9 bits)
S2: 49 (100.3 bits)